{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "# MCMC diagnostics\n", "\n", "**[Data set download](https://s3.amazonaws.com/bebi103.caltech.edu/data/singer_transcript_counts.csv)**\n", "\n", "
\\n\"+\n", " \"BokehJS does not appear to have successfully loaded. If loading BokehJS from CDN, this \\n\"+\n", " \"may be due to a slow or bad network connection. Possible fixes:\\n\"+\n", " \"
\\n\"+\n", " \"\\n\"+\n",
" \"from bokeh.resources import INLINE\\n\"+\n",
" \"output_notebook(resources=INLINE)\\n\"+\n",
" \"
\\n\"+\n",
" \"\\n\"+\n \"BokehJS does not appear to have successfully loaded. If loading BokehJS from CDN, this \\n\"+\n \"may be due to a slow or bad network connection. Possible fixes:\\n\"+\n \"
\\n\"+\n \"\\n\"+\n \"from bokeh.resources import INLINE\\n\"+\n \"output_notebook(resources=INLINE)\\n\"+\n \"
\\n\"+\n \"\n", " | mean | \n", "sd | \n", "hpd_3% | \n", "hpd_97% | \n", "mcse_mean | \n", "mcse_sd | \n", "ess_mean | \n", "ess_sd | \n", "ess_bulk | \n", "ess_tail | \n", "r_hat | \n", "
---|---|---|---|---|---|---|---|---|---|---|---|
alpha | \n", "4.508 | \n", "0.395 | \n", "3.758 | \n", "5.223 | \n", "0.014 | \n", "0.010 | \n", "820.0 | \n", "817.0 | \n", "819.0 | \n", "832.0 | \n", "1.01 | \n", "
b | \n", "16.762 | \n", "1.552 | \n", "14.024 | \n", "19.775 | \n", "0.055 | \n", "0.039 | \n", "800.0 | \n", "792.0 | \n", "806.0 | \n", "769.0 | \n", "1.01 | \n", "
beta_ | \n", "0.060 | \n", "0.006 | \n", "0.050 | \n", "0.071 | \n", "0.000 | \n", "0.000 | \n", "806.0 | \n", "803.0 | \n", "806.0 | \n", "769.0 | \n", "1.01 | \n", "
\n", " | mean | \n", "sd | \n", "hpd_3% | \n", "hpd_97% | \n", "mcse_mean | \n", "mcse_sd | \n", "ess_mean | \n", "ess_sd | \n", "ess_bulk | \n", "ess_tail | \n", "r_hat | \n", "
---|---|---|---|---|---|---|---|---|---|---|---|
alpha | \n", "5.405 | \n", "3.362 | \n", "1.477 | \n", "10.140 | \n", "1.623 | \n", "1.236 | \n", "4.0 | \n", "4.0 | \n", "4.0 | \n", "11.0 | \n", "3.88 | \n", "
b | \n", "21.401 | \n", "13.681 | \n", "6.486 | \n", "46.992 | \n", "6.694 | \n", "5.110 | \n", "4.0 | \n", "4.0 | \n", "5.0 | \n", "7.0 | \n", "4.13 | \n", "
beta_ | \n", "0.068 | \n", "0.038 | \n", "0.020 | \n", "0.122 | \n", "0.018 | \n", "0.014 | \n", "4.0 | \n", "4.0 | \n", "5.0 | \n", "11.0 | \n", "3.02 | \n", "
\n", " | mean | \n", "sd | \n", "hpd_3% | \n", "hpd_97% | \n", "mcse_mean | \n", "mcse_sd | \n", "ess_mean | \n", "ess_sd | \n", "ess_bulk | \n", "ess_tail | \n", "r_hat | \n", "
---|---|---|---|---|---|---|---|---|---|---|---|
alpha | \n", "4.508 | \n", "0.395 | \n", "3.758 | \n", "5.223 | \n", "0.014 | \n", "0.010 | \n", "820.0 | \n", "817.0 | \n", "819.0 | \n", "832.0 | \n", "1.01 | \n", "
b | \n", "16.762 | \n", "1.552 | \n", "14.024 | \n", "19.775 | \n", "0.055 | \n", "0.039 | \n", "800.0 | \n", "792.0 | \n", "806.0 | \n", "769.0 | \n", "1.01 | \n", "
beta_ | \n", "0.060 | \n", "0.006 | \n", "0.050 | \n", "0.071 | \n", "0.000 | \n", "0.000 | \n", "806.0 | \n", "803.0 | \n", "806.0 | \n", "769.0 | \n", "1.01 | \n", "