Blogs and article series
- Tom Augspurger's blog on modern Pandas
- Points of View series from Nature Methods on visualization of biological data
- Points of Significance series from Nature Methods on good statistical practices
Videos
- Joe Blitzstein's famous course on probability
- A set of cartoons
- Eric Ma's lighting talk about data validaton (just watch the first 3:30)
- Smith and van der Walt's talk about colormaps
Online tutorials
- 10 minutes to pandas
- Lectures on scientific python (a couple especially good ones have links below)
- Segmentation using scikit-image
- SciPy lecture on basic image processing
- More advanced SciPy lecture on image processing
- Dan White's excellent intro to image processing
- Collection of teaching materials from the Biopolis Dresden Imaging Platform
Useful tools
- ColorBrewer2: colormap generator
Other image processing tools
- ImageJ: NIH-sponsored biological image processing suite
- ImageJ2: an in-progress re-write of ImageJ
- Fiji: ImageJ, batteries included!
- DeepCell: deep learning model for image segmentation
- DeepLabCut: deep learning model for pose estimation
- Insight Segementation and Registration Toolkit (ITK): sophisticated system for segmentation
- CellProfiler: Java-based cell segmenter
- Icy: platform for bioimage informatics
- OpenCV: computer vision software
- LOCI Bio-Formats: tools to convert between image formats